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COMPUTATIONAL BIOPHYSICS

UNIVERSITY OF TWENTE
THE NETHERLANDS
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2006 2005 2004 2003 2002 2001 2000 < 2000

Publications 2005

P. Kindt and W.J. Briels
Scaling of mesoscale simulations of polymer melts with the bare friction coefficient
J. Chem. Phys. 123, 224903 (8 December 2005)

Y. Tao, W.K. den Otter and W.J. Briels
Kayaking and wagging of rods in shear flow
Phys. Rev. Lett. 95, 237802 (2 december 2005)

W.K. den Otter
Area compressibility and buckling of amphiphilic bilayers in molecular dynamics simulations
J. Chem. Phys. 123, 214906 (1 December 2005)

J.T. Padding, A. Wysocki, H. Löwen and A.A. Louis
Stick boundary conditions and rotational velocity autocorrelation functions for colloidal particles in a coarse grained representation of the solvent
J. Phys.: Condens. Matter 17, S3393 (16 November 2005)

J.T. Padding, E.S. Boek and W.J. Briels
Rheology of wormlike micellar fluids from Brownian and molecular dynamics simulations
J. Phys.: Condens. Matter 17, S3347 (16 November 2005)

R. Stepanyan, J.J.M. Slot, J. Molenaar and M. Tchesnokov
Flow-induced correlation effects within a linear chain in a polymer melt
Phys. Rev. E 72, 051807 (November 2005).

E.S. Boek, J.T. Padding, W.K. den Otter and W.J. Briels
Mechanical properties of surfactant bilayer membranes from atomistic and coarse-grained molecular dynamics simulations
J. Phys. Chem. B 109, 19851 (October 2005)

R. Stepanyan, J.J.M. Slot, J. Molenaar and M.A. Tchesnokov
A simple constitutive model for a polymer flow near a polymer grafted wall
J. Rheol. 49, 1129 (Sept./Oct. 2005).

J.K.G. Dhont and W.J. Briels
Isotropic-nematic spinodal decomposition dynamics
Phys. Rev. E 72, 031404 (1 September 2005)

S.A. Shkulipa, W.K. den Otter and W.J. Briels
Surface viscosity, diffusion and intermonolayer friction: simulating sheared amphiphilic bilayers
Biophys. J. 89, 823 (August 2005)

J.J.M. Slot and P.A.M. Steeman
Rheology of Polydisperse Star Polymer Melts: Extension of the parameter-free tube model of Milner and McLeish to arbitrary arm-length polydispersity
Macromol. Theory Simul. 14, 387 (22 July 2005).

Y. Tao, W.K. den Otter, J.T. Padding, J.K.G. Dhont and W.J. Briels
Brownian dynamics simulations of the self and collective rotational diffusion coefficients of rigid long thin rods
J. Chem. Phys. 122, 244903 (22 June 2005)

M.A. Tchesnokov, J. Molenaar, J.J.M. Slot and R. Stepanyan
A molecular model for cohesive slip at polymer melt/solid interfaces
J. Chem. Phys. 122, 214711 (1 June 2005).

M. Knaapila, R. Stepanyan, B. P. Lyons, M. Torkkeli, T. P. A. Hase, R. Serimaa, R. Güntner, O. H. Seeck, U. Scherf and A. P. Monkman
The influence of the molecular weight on the thermotropic alignment and self-organized structure formation of branched side chain hairy-rod polyfluorene in thin films
Macromolecules 38, 2744 (April 2005).

M. Knaapila, R. Stepanyan, M. Torkkeli, B. P. Lyons, T. P. Ikonen, L. Almásy, J. P. Foreman, R. Serimaa, R. Güntner, U. Scherf and A. P. Monkman
The influence of molecular weight on the phase behavior and structure formation of branched side-chain hairy-rod polyfluorene in bulk phase
Phys. Rev. E 71, 041802 (April 2005).

M.A. Tchesnokov, J. Molenaar and J.J.M. Slot
Dynamics of molecules adsorbed on a die wall during polymer melt extrusion
J. Non-Newtonian Fluid Mech. 126, 71 (March 2005).

E.S. Boek, J.T. Padding, V.J. Anderson, P.M.J. Tardy, J.P. Crawshaw and J.R.A. Pearson
Constitutive equations for extensional flow of wormlike micelles: stability analysis of the Bautista-Manero model
J. Non-Newtonian Fluid Mech. 126, 39 (March 2005).

Presentations 2005

W.J. Briels
Simulations of amphiphilic bilayers and worms.
Parijs, 17-19 January 2005.

W.J. Briels
Coarse Graining of Polymer Melts.
San Sebastian, 24-25 January 2005.

W.J. Briels
Pore nucleation free energies in amphiphilic bilayers by means of constrained molecular dynamics simulations.
Lunteren, 7-8 February 2005.

J.J.M. Slot
A molecular model for slip at polymer/melt interfaces.
Lubbock, Texas, 15 February 2005.

J.J.M. Slot
Flow induced correlation effects within a linear chain in a polymer melt
Lubbock, Texas, 15 February 2005.

W.J. Briels
Computer simulatins of amphiphilic worms and bilayers.
Manchester, 1-2 March 2005.

W.J. Briels
Computer simulatins of amphiphilic worms and bilayers.
Delft, 16 March 2005.

A. van den Noort
Resin Rheology
Arnhem, March 21, 2005.

W.J. Briels
Simulation of worms and bilayers.
Montpellier, 28 March-1 April 2005.

W.K. den Otter
Amphiphillic ensembles.
Enschede, 31 March 2005.

P. Kindt
Meso simulation of polymers.
Enschede, 31 March 2005.

J.T. Padding
Hydrodynamic and Brownian fluctuations in sedimenting suspensions.
Cambridge, 25 April 2005.

W.K. den Otter
Amphiphillic ensembles.
Enschede, 26 May 2005.

P. Kindt
Meso simulation of polymers.
Enschede, 26 May 2005.

W.K. den Otter
Computer simulations of amphiphilic bilayers and worms.
Mainz, 8-10 June 2005.

J.J.M. Slot
Rheological modeling of polydisperse star polymer melts.
Eindhoven, 15 June 2005.

W.J. Briels
Life and science of poor Phil D bridging time and length scales in article based computer simulations.
Biezenmortel, 12 July 2005.

P. Kindt
Polymer melt dynamics
Biezenmortel, 14 July 2005.

P.M. Jager
The influence of the bending stiffness and polydispersity on the phase behaviour of a diblock copolymer melt
Biezenmortel, 14 July 2005.

P. Kindt
Meso simulation of polymers.
Lyon, 17-23 July 2005.

J.J.M. Slot
Flow induced correlation effects within a linear chain in a polymer melt.
Enschede, 22 September 2005.

Y. Tao
Tumbling of rigid long thin rods under shear flow.
Enschede, 22 September 2005.

J.T. Padding
Mesoscopic simulations of entangled wormlike micelles.
Enschede, 23 September 2005.

W.K. den Otter
Simulations of dynamical properties of bilayers.
Enschede, 23 September 2005.

A. van den Noort
Rheology of resin systems
Arnhem, 26 September 2005.

J.T. Padding/A.Louis
Hydrodynamic Interactions and brownian forces in colloidal suspensions.
Amsterdam, 29 September 2005.

A. van den Noort
Rheology of resin systems.
Amsterdam, 29 September 2005.

W.J. Briels
Simulations of sheared bilayers.
Amsterdam, 30 September 2005.

Y. Tao
Tumbling of rigid long thin rods under shear flow.
Amsterdam, 30 September 2005.

W.J. Briels
Simulation of Polymers, Worms and Bilayers.
Snowbird, Utah, 5 October 2005.

J.T. Padding and A. Louis
Hydrodynamic and Brownian fluctuations in colloidal suspensions.
Lyon, 13 October 2005.

P. Kindt
Mesoscale computer simulations of dynamics of athermal polymer melts.
Leeds, 25 October 2005.

W.J. Briels
Computer simulations of the dynamics of polymer melts and blends.
Bonn, 1-4 november 2005.

W.K. den Otter
Simulations of dynamical properties of bilayers.
Bonn, 1-4 november 2005.

Y. Tao
Tumbling of rigid long thin rods under shear flow.
Bonn, 1-4 november 2005.

Poster Presentations 2005

P. Kindt and W.J. Briels
Entanglements in polymer melts.
Delft, 14 January 2005

A. van den Noort and W.J. Briels
Towards mesoscopic simulations of resin rheology.
Delft, 14 January 2005

J.T. Padding and A. Louis
Hydrodynamic and Brownian fluctuations in sedimenting suspensions.
Utrecht, 2-6 July 2005

P. Kindt and W.J. Briels
Entanglements in polymer melts.
Biezenmortel, 12-15 July 2005

P.M. Jager and J.J.M. Slot
Phase behaviour of a melt of monodisperse semi-flexible diblock copolymers.
Biezenmortel, 12-15 July 2005

A. van den Noort and W.J. Briels
Towards mesoscopic simulations of resin rheology.
Enschede, 22-23 September 2005

Y. Tao, W.K. den Otter, W.J. Briels
Periodic orientational motions of brownian rigid rodlike colloids in shear flow.
Enschede, 22-23 September 2005

J.T. Padding, A.A. Louis
Hydrodynamic and brownian fluctuations in colloidal suspensions.
Enschede, 22-23 September 2005

S.K. Shkulipa, W.K. den Otter, W.J. Briels
Simulations of thermal undulations of bilayers.
Enschede, 22-23 September 2005

S.K. Shkulipa, W.K. den Otter, W.J. Briels
Simulating the dynamics and break-up of stationary and sheared bilayers.
Enschede, 22-23 September 2005

P. Kindt and W.J. Briels
Scaling in polymer melt simulations.
Enschede, 22-23 September 2005

S.K. Shkulipa, W.K. den Otter, W.J. Briels
Simulations of thermal undulations of bilayers.
Amsterdam, 29-30 September 2005

S.K. Shkulipa, W.K. den Otter, W.J. Briels
Simulating the dynamics and break-up of stationary and sheared bilayers.
Amsterdam, 29-30 September 2005

A. van den Noort and W.J. Briels
Towards mesoscopic simulations of resin rheology.
Amsterdam, 29-30 September 2005

Y. Tao, W.K. den Otter, W.J. Briels
Periodic orientational motions of brownian rigid rodlike colloids in shear flow.
Amsterdam, 29-30 September 2005

P. Kindt and W.J. Briels
Scaling in polymer melt simulations.
Amsterdam, 29-30 September 2005

S.K. Shkulipa, W.K. den Otter, W.J. Briels
Simulations of thermal undulations of bilayers.
Bonn, 1-4 November 2005

P. Kindt and W.J. Briels
Scaling in polymer melt simulations.
Bonn, 1-4 November 2005

W. Shchettinin and W.J. Briels
Brownian dynamics simulations of needle chains.
Bonn, 1-4 November 2005

Y. Tao, W.K. den Otter, W.J. Briels
Periodic orientational motions of brownian rigid rodlike colloids in shear flow.
Bonn, 1-4 November 2005

A. van den Noort and W.J. Briels
Towards mesoscopic simulations of resin rheology.
Bonn, 1-4 November 2005

A.K. Thakre, W.K. den Otter and W.J. Briels
MD simulation of phase separation in binary liquids.
Bonn, 1-4 November 2005

J.T. Padding, A.A. Louis
Hydrodynamic and brownian fluctuations in colloidal suspensions.
Bonn, 1-4 November 2005