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COMPUTATIONAL BIOPHYSICS

UNIVERSITY OF TWENTE
THE NETHERLANDS
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2007 2006 2005 2004 2003 2002 2001 2000 < 2000

Publications 2004

T.V. Tolpekina, W.K. den Otter and W.J. Briels
Nucleation free energy of pore formation in an amphiphilic bilayer studied by molecular dynamics simulations
J. Chem. Phys. 121, 12060 (15 December 2004).

J.T. Padding and A.A. Louis
Hydrodynamic and Brownian Fluctuations in Sedimenting Suspensions
Phys. Rev. Lett. 931, 220601 (26 November 2004).

T.V. Tolpekina
Free energy calculations of conformational transitions in supramolecules and amphiphilic bilayers
Thesis, University of Twente (5 November 2004)

T.V. Tolpekina, W.K. den Otter and W.J. Briels
Simulations of stable pores in membranes - system size dependence and line tension
J. Chem. Phys. 121, 8014 (22 October 2004).

W.J. Briels, P. Mulder and W.K. den Otter
Simulations of elementary processes in entangle wormlike micelles under tension: a kinetic pathway to Y-junctions and shear induced structures
J. Phys.: Condens. Matter 16, S3965 (29 September 2004)

E.S. Boek, W.K. den Otter, W.J. Briels and D. Iakovlev
Molecular dynamics simulation of amphiphilic membranes and wormlike micelles: a multi-scale modelling approach to the design of visco-elastic surfactant solutions
Phil. Trans. Royal Soc. (London) 362, 1625 (15 August 2004)

A. AlSunaidi, W.K. den Otter and J.H.R. Clarke
Liquid-crystalline ordering in rod-coil diblock copolymers studied by mesoscale simulations
Phil. Trans. Royal Soc. (London) 362, 1773 (15 August 2004)

M.A.I. Schutyser, W.J. Briels and A. Rinzema
Combined discrete particle and continuum model predicting solid-state fermentation in a drum fermentor
Biotechnol. Bioeng. 86, 405 (2004) (20 May 2004)

W.K. den Otter and J.H.R. Clarke
Dissipative particle dynamics
in Simulation methods for polymers, edited by M.J. Kotelyanskii and D.N. Theodorou (Marcel Dekker Publishers, New York, 2004)

J.T. Padding and W.J. Briels
A time-integrated estimate of the entanglement mass in polymer melts in agreement with the one determined by time-resolved measurements
J. Chem. Phys. 120, 2996 (8 February 2004)

C. Aleman, W.K. den Otter, T.V. Tolpekina and W.J. Briels
Impact of the solvent on the conformational isomerism of calix[4]arenes: a study based on continuum solvation models
J. Org. Chem. 69, 951 (2004) (6 February 2004)

Presentations 2004

W.J. Briels
Computer simulations of amphiphilic worms and bi-layers.
Tarragona, 1-4 December 2004

W.J. Briels
Simulations of worms and membranes.
Montpellier, 18-19 November 2004

W.J. Briels
Simulations of entangled wormlike micelles.
Veldhoven, 8-9 November 2004

W.J. Briels
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Geleen, 1-2 November 2004

S. Shkulipa
Viscosity and inter-monolayer friction coefficient of bilayers from sheared molecular dynamics simulations.
Schiermonnikoog, 1-2 November 2004

Y. Tao
Brownian motion of rigid long thin rod-like colloids.
Schiermonnikoog, 1-2 November 2004

W.K. den Otter
Simulations of amphiphilic bilayers and worms
Manchester, 9 October 2004

W.K. den Otter
Simulations of sheared Brownian hard spheres
Mainz, 5 October 2004

W.J. Briels
Entanglements in polymer melts.
Genua, 29-31 August 2004

W.J. Briels
Entanglements in polymer melts.
Eindhoven, 21 June 2004

W.J. Briels
Simulation of polymer dynamics.
St. Petersburg, 27-28 May 2004

W.J. Briels
Nucleation free energies of pores in amphiphilic bi-layers from constrained molecular dynamics simulations.
Lyon, 12-14 May 2004

W.J. Briels
Simulations of amphiphilic worms, bi-layers and vesicles in equilibrium and in shear flow.
Bonn, 29 March-1 April 2004

W.J. Briels
Entanglements in polymer melts.
Lyon, 22-24 March 2004

T. Tolpekina
Line tension and system-size dependence of holes in an amphiphilic bilayer.
Lunteren, 16-17 February 2004

W.K. den Otter
Mechanical properties of amphiphilic bilayers from computer simulations.
Lunteren, 26-27 January 2004

W.J. Briels
Rheological properties of entangled polymers by coarse grained particle simulations.
Mainz, 19 January 2004

Poster Presentations 2004

W.K. den Otter and W.J. Briels
Simulations of elementary processes in entangled wormlike micelles under tension: a kinetic pathway to Y-junctions and shear induced structures.
Kerkrade, 16-17 November 2004

P. Kindt and W.J. Briels
Entanglements in polymer melts.
Kerkrade, 16-17 November 2004

S. Shkulipa, W.K. den Otter and W.J. Briels
Viscosity and inter-monolayer friction coefficient of bilayers from sheared molecular dynamics simulations.
Kerkrade, 16-17 November 2004

A. van den Noort and W.J. Briels
Towards mesocopic simulations of resin rheology.
Kerkrade, 16-17 November 2004

Y. Tao, W.K. den Otter and W.J. Briels
Brownian Motion of Rigid Long Thin Rod-Like Colloids in Shear Flow.
Kerkrade, 16-17 November 2004

P. Kindt and W.J. Briels
Entanglements in polymer melts.
Veldhoven, 8-9 November 2004

W.K. den Otter and W.J. Briels
Simulations of elementary processes in entangled wormlike micelles under tension: a kinetic pathway to Y-junctions and shear induced structures.
Veldhoven, 8-9 November 2004

S. Shkulipa, W.K. den Otter and W.J. Briels
Viscosity and inter-monolayer friction coefficient of bilayers from sheared molecular dynamics simulations.
Veldhoven, 8-9 November 2004

A. van den Noort and W.J. Briels
Towards mesoscopic simulations of resin rheology.
Veldhoven, 8-9 November 2004

Y. Tao, W.K. den Otter and W.J. Briels
Brownian Motion of Rigid Long Thin Rod-Like Colloids in Shear Flow.
Veldhoven, 8-9 November 2004

P. Kindt and W.J. Briels
Entanglements in polymer melts.
Ede, 26 October 2004

T. Tolpekina, W.K. den Otter and W.J. Briels
Line tension and system-size dependence of holes in an amphiphilic bilayer.
Lunteren, 16-17 February 2004

Y. Tao, J.T. Padding, W.K. den Otter, W.J. Briels and J.K.G. Dhont
Brownian Motion of Rigid Long Thin Rod-Like Colloids in Shear Flow.
Lunteren, 16-17 February 2004

S. Shkulipa, W.K. den Otter and W.J. Briels
Simulating an amphiphilic worm-like system.
Lunteren, 16-17 February 2004

T. Tolpekina, W.K. den Otter and W.J. Briels
Line tension and system-size dependence of holes in an amphiphilic bilayer.
Lunteren, 22-23 January 2004

W.K. den Otter and W.J. Briels
Simulations of vesicle formation.
Lunteren, 22-23 January 2004

Y. Tao, J.T. Padding, W.K. den Otter, W.J. Briels and J.K.G. Dhont
Brownian Motion of Rigid Long Thin Rod-Like Colloids in Shear Flow.
Delft, 13 January 2004

S. Shkulipa, W.K. den Otter and W.J. Briels
Simulating an amphiphilic worm-like system.
Delft, 13 January 2004

W.K. den Otter and W.J. Briels
Simulations of vesicle formation.
Delft, 13 January 2004

J.T. Padding and W.J. Briels
Entanglements in polymer melts.
Delft, 13 January 2004

A. van den Noort and W.J. Briels
Towards mesoscopic simulations of resin rheology.
Delft, 13 January 2004